The school is incorporated in the state of Texas as Cypress Community Christian School Society, Inc.  Cypress Christian is operated by a Board of Directors elected from and by the membership of the Society.  Members act as the corporate shareholders.  The majority of the Board of Directors is elected by and from the membership of the Society and is accountable to the body.

The Society is an association of born-again, Bible-believing school parents, grandparents, alumni, alumni parents, employees and spouses who meet the requirements for membership. The Society's by-laws invest the Board with the responsibility and authority to "administer the affairs of the school." The Board sets the educational and business policies of the school and charges the school's administrator to execute these policies and provide leadership and supervision for the faculty and staff.

Society meetings are held in November and March of each year. The meeting in November is to report on the school and conduct business, and the meeting in March is to conduct business and elect new Directors. Application for membership in the Cypress Community Christian School Society, Inc. must be made annually before the monthly Board meetings (since membership applicants are approved by the Board of Directors) preceding the November and March Society meetings.